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Projects#

Relationships among biocommons projects

(click to enlarge) biocommons projects

Active projects#

  • anyvar (alpha) is a proof-of-concept variation translation, validation, and registration service.
    anyvar pulse anyvar stars anyvar forks anyvar issues anyvar prs anyvar contributors

  • bioutils provides common tools and lookup tables used primarily by the hgvs and uta packages
    bioutils pulse bioutils stars bioutils forks bioutils issues bioutils prs bioutils contributors

  • eutils simplifies searching, fetching, and parsing records from NCBI using their E-utilities interface
    eutils pulse eutils stars eutils forks eutils issues eutils prs eutils contributors

  • hgvs parses, formats, validates, normalizes, and transforms sequence variant expressions according to HGVS Nomenclature
    hgvs pulse hgvs stars hgvs forks hgvs issues hgvs prs hgvs contributors

  • SeqRepo stores biological sequences in a non-redundant, compressed, journalled, file-based storage.
    biocommons.seqrepo pulse biocommons.seqrepo stars biocommons.seqrepo forks biocommons.seqrepo issues biocommons.seqrepo prs biocommons.seqrepo contributors

  • The seqrepo-rest-service provides a REST interface to biological sequences and sequence metadata using a seqrepo instance backend.
    seqrepo-rest-service pulse seqrepo-rest-service stars seqrepo-rest-service forks seqrepo-rest-service issues seqrepo-rest-service prs seqrepo-rest-service contributors

  • UTA (Universal Transcript Archive) is a comprehensive archive of genome-transcript alignments; multiple transcript sources and versions, multiple genomic references, and multiple alignment methods, particularly splign (NCBI) and (blat) (UCSC)
    uta pulse uta stars uta forks uta issues uta prs uta contributors

Administrative Repos#